in short yes...
long version: if your flange is cracked it will suck in air the ecu does not know about i.e. leaning the mixture.
when you play with throttle the injector will inject more fuel; it still sucks in air from cracks but the vacuum pressure is lower behind the throttle when it's open, so will suck in less from the cracked flange. hence it's running better.
make sense?