Hi Gambit,
This morning I cable tied all pipes on the over run valve.
I also disconnected the engine breather pipe from the side of the airbox (which emits a fuelly smelling smoke?)
Seems to run much better now, when I change gear the revs were almost going up slightly when I put the clutch in which seems to be fixed.
Also, although tickover is still slightly lumpy, it's nowhere near cutting out like it was.
I did find a small air pipe which is disconnected down the back of the engine which I'm not sure where it should go, I'll post a pic...

Basically the pipe I'm pointing to connects under the large plastic pipe that connects to the throttle body. It also t's off and isn't connected to anything.
I guess my next two questions are:
1: should the breather pipe be emitting fuel smelling smoke and can I run it with that disconnected?
(Wondered if a fuel chAnge may help this?)
2: do I need to worry about that small pipe down the back of the engine that isn't connected to anything?
As always, thanks massively for your help!