I dunno......
its easy for me to say don't get stressed about it sort it out next week I had a mark 6 3 door before this one and that had been painted and it pissed me of every time I looked at it

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Reject it. That car is tainted in your mind now. It took forever to arrive and it's been messed about with. Liek an earlier poster, I wonder whether you've been given a hailstorm-repaired car.
My MK5 Golf 170TDI PD got clattered by a bus when it was 2 weeks old. Due to the piss poor repair job and continual remedial work (rear wheel arch of the new rear quarter panel rusted up every 3 months), I hated that car from when I finally got it back 7 weeks later to when I got shot of it via part ex 18 months later. You don't want to be resenting a £30k purchase for the whole time you own it. Get shot and get another in the spec you really want (manual).