All ISO connector leads utilise the same colour coding system - it's the whole point of having a 'standard'. So, it;s v easy to identify which wires to 'cut'.
So, if you're running new cables for these 6x9's (which I think is what you're trying to do?) you're best off connecting them directly to the headunit end of the loom, prior to them connecting to the VW blocks. That way when (if) you ever remove your sony head unit you haven't altered the standard car loom in any way. It also allows you to perform the wiring work outside of the car and not trying to crimp wires that are physically inside/behind the dashboard.
You're looking for the purple (rear, right hand side) and green (rear, left hand side) pairs on the Sony loom. Striped wire denotes NEGATIVE polarity positions.
1) Whip your stereo out, take off the loom
2) Cut the wires approx half way between the Sony block and the ISO female block
3) Strip back insulation, fit and crimp some crimp connectors
4) Run new speaker cables, fitted with corresponding connectors
5) Connect up, re-install head unit and enjoy