The best and easiest thing to do would be to to get the best door speakers you can afford, and thoroughly sound deaden the doors. You'd be surprised how much bass can be had from well installed 6" speakers. A good 2 channel amp would make it better still.
Don't bother trying to run a sub directly from the headunit. To start with, it has nowhere near enough power, and secondly you'd need to filter out all of the high frequencies that a sub can't reproduce.