When I did my vr6 swap into the Anni I couldn't get the Engine ECU to talk to the VAG 5052 computer, however, ABS, Airbag scanned fine, I traced it back to that single wire I mentioned not being plugged in, found the wire on the engine loom and car loom side, plugged it in, it worked fine and I was then able to erase the learnt values on my ECU and get the car started
It was a brown plug with a white/grey wire from memory
It does not plug into the fuse box it's one of those single wires that plug into another single wire
I hope this makes sense