Agree with the above. The only way to test the true power increase or decrease would have been to have had the car rolling roaded before the mods and then after the mods. Your best bet is to get it tuned on a RR. Now that you've changed the filter (possiblitly to get more air in) and changed the exhaust (possiblility to get more gas out) the mixture may need tweaking ever so slightly.
IMO the cone filter will have probably lost you power due to heat soak. EVERYBODY knows that the best induction on a golf 1,2,3 is panel filter and butchered airbox. I've also head instances where decat pipes can actually lose power.... (not sure if that true)
On subject of cars losing bhp over time - thats true as a general rule of thumb but if your old enough to have watched some of the earlier top gears then you will have seen the test they did with 2 mk2 16v's. One with sub 5k mileage and one with 60k on the clock - guess which one one, by a fair bit in a straight line race.
