It may be that the rubber grommet there is no longer letting fluid out or is only letting fluid in.. I had the same problem after I took a long 600 mile trip in the rain to Scotland last year...it turned out the grommet was perished so I removed it and siliconed a replacement in and that was that...You will have to remove the rear carpets and the insulation underneath. I suggest you do this ASAP as that sound deadening (or whatever that fiberglass looking stuff is) will start to rot and dry it out and you can put it back and see if it stays dry and then replace it with something better...
I know my repair has held up as today went to Portsmouth and the real stayed dry...
The grommet looked fine from the bottom of the car, but the problem was that it was letting water in and not out.....

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People have suggested that it be welded over...but I don't have a welder...so I did a quick fix..