I have been told the 16v box is the best for the 1.8t conversion, so you could just keep the 16v box, and then not have to mess about with the shifter, and also make things easier with drive shafts. As im not sure if the mk4 and mk3 are interchangable with drive shafts?
When i enquired with MV about putting one in, they suggested fitting it to my 8v gearbox.
And i know of a 16v abf running on an 8v gearbox.
So im pretty sure the 1.8t would fit both the 8v and 16v mk3 gearboxs just fine.
Food for thought :/