It will pass if any holes are hidden by the sill covers and said sill covers are secure enough that said MOT man cant have a look, if any holes are visible then you are screwed.
If its got rusty sill, bent jacking points then you need new sills, patches will rot through in no time at all and you will need another jack to get under the car.
Unless you are Jamo or Tshirt then rotten sills means your car will never be a keeper due to the cost involved to put it right.
When you go see a Mk3 always feel the jacking points first, if they are bent and rusty walk away.
You will walk away from 95% of Mk3's